Dimensional Reduction for the General Markov Model on Phylogenetic Trees
نویسندگان
چکیده
منابع مشابه
The algebra of the general Markov model on phylogenetic trees and networks.
It is known that the Kimura 3ST model of sequence evolution on phylogenetic trees can be extended quite naturally to arbitrary split systems. However, this extension relies heavily on mathematical peculiarities of the associated Hadamard transformation, and providing an analogous augmentation of the general Markov model has thus far been elusive. In this paper, we rectify this shortcoming by sh...
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SUMMARY Continuous-time Markov chain models with finite state space are routinely used for analysis of discrete character data on phylogenetic trees. Examples of such discrete character data include restriction sites, gene family presence/absence, intron presence/absence and gene family size data. While models with constrained substitution rate matrices have been used to good effect, more biolo...
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ژورنال
عنوان ژورنال: Bulletin of Mathematical Biology
سال: 2017
ISSN: 0092-8240,1522-9602
DOI: 10.1007/s11538-017-0249-6